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CoreGenes3.5: a webserver for the determination of core genes from sets of viral and small bacterial genomes

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dc.contributor.author Turner, Dann
dc.contributor.author Reynolds, Darren
dc.contributor.author Seto, Donald
dc.contributor.author Mahadevan, Padmanabhan
dc.date.accessioned 2015-09-14T19:21:08Z
dc.date.available 2015-09-14T19:21:08Z
dc.date.issued 2013-04-08
dc.identifier.citation Turner et al.: CoreGenes3.5: a webserver for the determination of core genes from sets of viral and small bacterial genomes. BMC Research Notes 2013 6:140. en_US
dc.identifier.uri https://hdl.handle.net/1920/9886
dc.description.abstract Background: CoreGenes3.5 is a webserver that determines sets of core genes from viral and small bacterial genomes as an automated batch process. Previous versions of CoreGenes have been used to classify bacteriophage genomes and mine data from pathogen genomes. Findings: CoreGenes3.5 accepts as input GenBank accession numbers of genomes and performs iterative BLASTP analyses to output a set of core genes. After completion of the program run, the results can be either displayed in a new window for one pair of reference and query genomes or emailed to the user for multiple pairs of small genomes in tabular format. Conclusions: With the number of genomes sequenced increasing daily and interest in determining phylogenetic relationships, CoreGenes3.5 provides a user-friendly web interface for wet-bench biologists to process multiple small genomes for core gene determinations. CoreGenes3.5 is available at http://binf.gmu.edu:8080/CoreGenes3.5.
dc.description.sponsorship Publication of this article was funded in part by the George Mason University Libraries Open Access Publishing Fund. en_US
dc.language.iso en_US en_US
dc.publisher BioMed Central en_US
dc.rights Attribution-NonCommercial 3.0 United States *
dc.rights.uri http://creativecommons.org/licenses/by-nc/3.0/us/ *
dc.subject core genes en_US
dc.subject bacteriophage en_US
dc.subject taxonomy en_US
dc.subject viral genomics en_US
dc.subject data mining en_US
dc.title CoreGenes3.5: a webserver for the determination of core genes from sets of viral and small bacterial genomes en_US
dc.type Article en_US
dc.identifier.doi http://dx.doi.org/10.1186/1756-0500-6-140


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