CoreGenes3.5: a webserver for the determination of core genes from sets of viral and small bacterial genomes

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dc.contributor.authorTurner, Dann
dc.contributor.authorReynolds, Darren
dc.contributor.authorSeto, Donald
dc.contributor.authorMahadevan, Padmanabhan
dc.date.accessioned2015-09-14T19:21:08Z
dc.date.available2015-09-14T19:21:08Z
dc.date.issued2013-04-08
dc.description.abstractBackground: CoreGenes3.5 is a webserver that determines sets of core genes from viral and small bacterial genomes as an automated batch process. Previous versions of CoreGenes have been used to classify bacteriophage genomes and mine data from pathogen genomes. Findings: CoreGenes3.5 accepts as input GenBank accession numbers of genomes and performs iterative BLASTP analyses to output a set of core genes. After completion of the program run, the results can be either displayed in a new window for one pair of reference and query genomes or emailed to the user for multiple pairs of small genomes in tabular format. Conclusions: With the number of genomes sequenced increasing daily and interest in determining phylogenetic relationships, CoreGenes3.5 provides a user-friendly web interface for wet-bench biologists to process multiple small genomes for core gene determinations. CoreGenes3.5 is available at http://binf.gmu.edu:8080/CoreGenes3.5.
dc.description.sponsorshipPublication of this article was funded in part by the George Mason University Libraries Open Access Publishing Fund.
dc.identifier.citationTurner et al.: CoreGenes3.5: a webserver for the determination of core genes from sets of viral and small bacterial genomes. BMC Research Notes 2013 6:140.
dc.identifier.doihttp://dx.doi.org/10.1186/1756-0500-6-140
dc.identifier.urihttps://hdl.handle.net/1920/9886
dc.language.isoen_US
dc.publisherBioMed Central
dc.rightsAttribution-NonCommercial 3.0 United States
dc.rights.urihttps://creativecommons.org/licenses/by-nc/3.0/us/
dc.subjectCore genes
dc.subjectBacteriophage
dc.subjectTaxonomy
dc.subjectViral genomics
dc.subjectData mining
dc.titleCoreGenes3.5: a webserver for the determination of core genes from sets of viral and small bacterial genomes
dc.typeArticle

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